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Rotman MRI Tools

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fMRI Data Analysis - Protocols

List of fMRI/Structural MRI Tools available at RRI.
Data Processing using PLS
Data Processing using FSL
Data Processing using AFNI

AFNI User Guide

Below is the self help AFNI user guide. There are 4 chapters in total.

Chapter 1

Data Reconstruction in AFNI

Chapter 2

Data Preprocessing in AFNI

Chapter 3

Individual Participant Analysis in AFNI

Chapter 4

Group Analysis in AFNI In addition, I also include this chapter on ROI Analysis in AFNI. Some of you might find this useful as well. ROI Analysis in AFNI

SPM User Guide

SPM99

Data Preprocessing
Data Analysis
Lateralization Index
VBM

SPM2

Data Preprocessing
Data Analysis
SPM2 Ultimate Guide
SPM2 for fMRI

PLS User Guide

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