quote:
Not quite. Let me try to clarify. I have two fMRI datasets for each person (session1: pre-learning and session2: post-learning). In each session, there were 6 runs that contained 3 conditions each. I want to compare those three conditions with each other, but also look for session differences (i.e. pre-learning/ post-learning differences).
Before, I ran this analysis by setting up two session files for each person (pre and post). In each session file, I defined the six runs and the three conditions in each run and assigned the associated img files that made up each run.
Then, I ran the analysis by assigning all the session1 (pre) files to group 1 and all the session2 (post) files to group 2. BUT, I had the same subjects across these two groups, so a repeated measures design would be more appropriate.
In an earlier post, you suggested to another poster that to run a repeated measures design, all conditions should be assigned within a single session file, so that the analysis could be conducted with a single group. But, I don't think I can do that in this case. I can append 3 new conditions (for the post data) to my pre session files but, when assigning the img files to each run, I would need to assign different files to the pre and post conditions (because they come from different scanning sessions), and I don't see any way to do that in the gui.
Jesse..
you could do the following:
1) move the session2 images into the same subdirectory that holds the session1 images, ensuring that the filenaming convention for session2 images places them ^after^ the session1 data alphabetically.
2) rename your variables in your session1 session_profiles to indicate they are session1 variables
3) add in the variables for session2, and update their trial onsets to account for the session1 data (i.e, if you have 10 images in session1, and the first trial onset for session2 was image1, the trial onset should now point to the 11th image in the directory). Save as a new session_profile name.
this should give you a datamat for each subject that contains data for both sessions.
nancy