Is there any accepted standard for what constitutes a "high" versus a "low" value for any of the following?
1) singular values
2) probability of permuted SV being higher than observed
3) percent cross-block covariation
Hi Brandon - good questions, see below
Is there any accepted standard for what constitutes a "high" versus a "low" value for any of the following?
1) singular values
Singular values in PLS are essentially covariances so are scale-dependent (cf. correlation) so 'high' vs 'low' requires that comparisons to involve the same data.
2) probability of permuted SV being higher than observed
here you can use a 'traditional' alpha level to assess the likelihood of the observed singular values given random permutations of the data (e.g., P<0.05 indicates a random sample produces a singular great than or equal to the observed only 5% of the time - i.e., 5% probability the original obs is chance)
3) percent cross-block covariation
like #1, this depends on the data set. You can compare %'s within experiments but not between unless the designs are comparable. For clarity, consider a simple design with two conditions. A "task" PLS on these data would produce 1 latent variable accounting for 100% of the cross-block covariation.
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